Basic Information
Locus ID:
AsparagusV1_09.1579.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
chitin elicitor receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 66172277 | 66180551 | - | AsparagusV1_09.1579.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 59,350.75 Da | 33.86 | 88.81 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 134 | 165 | 2.67588E-4 | IPR018392 |
| CDD | cd00118 | LysM | 7 | 51 | 3.03954E-5 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 288 | 480 | 2.2E-44 | IPR001245 |
| Pfam | PF01476 | LysM domain | 8 | 52 | 0.018 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 269 | 545 | 6.74E-71 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 357 | 547 | 7.2E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 267 | 356 | 1.3E-26 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 133 | 173 | 5.9E-5 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 1 | 59 | 1.6E-7 | IPR036779 |
| SMART | SM00220 | serkin_6 | 286 | 518 | 5.9E-34 | IPR000719 |
| SMART | SM00257 | LysM_2 | 7 | 52 | 7.1E-5 | IPR018392 |
| SMART | SM00257 | LysM_2 | 134 | 174 | 4.7 | IPR018392 |
| SMART | SM00257 | LysM_2 | 69 | 115 | 9.7 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 133 | 185 | 9.237266 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 286 | 547 | 37.926483 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 6 | 51 | 10.036178 | IPR018392 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 401 | 413 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 292 | 314 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21630.1 | chitin elicitor receptor kinase 1. LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane. | 0 |
| RefSeq | XP_020246016.1 | LOW QUALITY PROTEIN: lysM domain receptor-like kinase 3 [Asparagus officinalis] | 0 |
| A0A0P0XII1 | Chitin elicitor receptor kinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CERK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1E7P0 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C09F15790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology