Basic Information
Locus ID:
AsparagusV1_09.1456.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
AFB3
Description:
Transport inhibitor response 1-like protein Os04g0395600
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 62258405 | 62262074 | - | AsparagusV1_09.1456.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 42,202.61 Da | 44.76 | 94.91 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 7 | 47 | 2.3E-19 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 155 | 172 | 0.45 | IPR001611 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 67 | 113 | 1.0E-22 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 43 | 7.46E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 88 | 345 | 1.37E-29 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 46 | 6.9E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 47 | 350 | 1.1E-96 | IPR032675 |
| SMART | SM00256 | fbox_2 | 10 | 51 | 6.9E-4 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_020247050.1 | transport inhibitor response 1-like protein Os04g0395600 [Asparagus officinalis] | 0 |
| Q7XVM8 | Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1E9F9 | F-box domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C09F14560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology