Basic Information
Locus ID:
AsparagusV1_09.138.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 1770623 | 1771060 | + | AsparagusV1_09.138.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.35 | 15,918.05 Da | 88.62 | 70.36 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 6.6168E-22 | - |
| Pfam | PF04564 | U-box domain | 6 | 56 | 3.8E-13 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 57 | 1.31E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 60 | 2.2E-22 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 9 | 75 | 2.6E-15 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 85 | 22.16909 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 115 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_020246252.1 | E3 ubiquitin-protein ligase PUB23-like [Asparagus officinalis] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1E4F5 | U-box domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C09F1380 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology