Basic Information
Locus ID:
AsparagusV1_09.1203.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 50116027 | 50117029 | - | AsparagusV1_09.1203.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 30,335.08 Da | 34.61 | 90.04 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 28 | 195 | 3.6E-27 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 27 | 199 | 2.46E-21 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 96 | 166 | 4.28E-12 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 11 | 215 | 2.4E-19 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 99 | 166 | 2.2E-13 | IPR029070 |
| SMART | SM00636 | 2g34 | 1 | 195 | 0.0014 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 1 | 212 | 20.347813 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_020245805.1 | probable chitinase 3 isoform X2 [Asparagus officinalis] | 0 |
| A0A1B1J8Z2 | Class V chitinase CHIT5 OS=Lotus japonicus OX=34305 GN=CHIT5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1E6X0 | GH18 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C09F12030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology