Basic Information
Locus ID:
AsparagusV1_09.1106.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 44066170 | 44094676 | + | AsparagusV1_09.1106.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.08 | 109,442.76 Da | 48.81 | 77.46 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 823 | 966 | 1.64271E-56 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 294 | 621 | 5.55129E-91 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 855 | 956 | 8.1E-14 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 309 | 699 | 2.2E-68 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 737 | 773 | 1.3E-6 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 278 | 621 | 2.66E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 527 | 981 | 2.77E-50 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 733 | 799 | 4.16E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 722 | 819 | 4.0E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 385 | 495 | 9.1E-12 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 501 | 622 | 6.4E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 266 | 356 | 5.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 636 | 982 | 5.2E-61 | IPR027417 |
| SMART | SM00487 | ultradead3 | 290 | 600 | 1.2E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 873 | 956 | 8.0E-17 | IPR001650 |
| SMART | SM00184 | ring_2 | 737 | 775 | 7.5E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 737 | 773 | 10.556635 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 826 | 982 | 13.212744 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 403 | 583 | 12.489614 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 752 | 761 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 191 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_020245577.1 | helicase-like transcription factor CHR28 isoform X3 [Asparagus officinalis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EA54 | Helicase-like transcription factor CHR28 OS=Asparagus officinalis OX=4686 GN=A4U43_C09F11060 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology