Basic Information
Locus ID:
AsparagusV1_09.1076.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 41155328 | 41175194 | - | AsparagusV1_09.1076.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 25,278.57 Da | 51.69 | 66.95 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 85 | 170 | 3.42388E-53 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 87 | 170 | 8.2E-19 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 82 | 180 | 1.83E-30 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 71 | 177 | 3.7E-28 | IPR036431 |
| SMART | SM00501 | bright_3 | 84 | 175 | 2.9E-32 | IPR001606 |
| SMART | SM01014 | ARID_2 | 80 | 170 | 7.8E-29 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 83 | 174 | 26.511158 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 226 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_020245256.1 | high mobility group B protein 15-like [Asparagus officinalis] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1E6N9 | ARID domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C09F10760 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology