Basic Information
Locus ID:
AsparagusV1_08.994.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 19934346 | 19938468 | + | AsparagusV1_08.994.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 54,462.71 Da | 38.36 | 88.55 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 18 | 262 | 1.24766E-130 | - |
| Pfam | PF13499 | EF-hand domain pair | 381 | 444 | 7.6E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 310 | 369 | 2.8E-7 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 19 | 263 | 5.2E-72 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 19 | 275 | 2.16E-81 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 292 | 470 | 1.73E-44 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 17 | 90 | 6.9E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 272 | 447 | 2.1E-52 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 91 | 271 | 3.3E-60 | - |
| SMART | SM00054 | efh_1 | 418 | 446 | 7.0E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 382 | 410 | 0.4 | IPR002048 |
| SMART | SM00220 | serkin_6 | 18 | 263 | 4.1E-87 | IPR000719 |
| SMART | SM00054 | efh_1 | 346 | 374 | 0.68 | IPR002048 |
| SMART | SM00054 | efh_1 | 310 | 338 | 2.4E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 306 | 341 | 14.122869 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 342 | 377 | 9.464338 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 378 | 413 | 11.891237 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 414 | 449 | 14.84815 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 263 | 45.304428 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 391 | 403 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 427 | 439 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 355 | 367 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 125 | 137 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 319 | 331 | - | IPR018247 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_020242755.1 | calcium-dependent protein kinase 20-like [Asparagus officinalis] | 0 |
| Q84SL0 | Calcium-dependent protein kinase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1FFQ9 | Calcium-dependent protein kinase OS=Asparagus officinalis OX=4686 GN=A4U43_C03F25440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology