Basic Information
Locus ID:
AsparagusV1_08.938.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase SD3-1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 18749503 | 18751944 | - | AsparagusV1_08.938.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 89,714.90 Da | 38.68 | 94.77 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 60 | 176 | 1.33583E-18 | IPR001480 |
| Pfam | PF01453 | D-mannose binding lectin | 115 | 188 | 1.9E-11 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 270 | 330 | 4.9E-10 | IPR000858 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 545 | 776 | 2.9E-23 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 520 | 779 | 2.7E-46 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 101 | 228 | 7.2E-21 | IPR036426 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 197 | 297 | 3.78E-6 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 607 | 787 | 7.6E-37 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 175 | 300 | 9.1E-8 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 49 | 174 | 2.2E-14 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 502 | 606 | 2.8E-19 | - |
| SMART | SM00220 | serkin_6 | 536 | 779 | 2.5E-9 | IPR000719 |
| SMART | SM00108 | blect_4 | 55 | 176 | 5.8E-13 | IPR001480 |
| PIRSF | PIRSF000641 | SRK | 20 | 807 | 1.7E-145 | IPR024171 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 532 | 783 | 19.198931 | IPR000719 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 347 | 427 | 8.185894 | IPR003609 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 49 | 174 | 11.916386 | IPR001480 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 652 | 664 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41890.1 | curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein. | 0 |
| RefSeq | XP_020242406.1 | G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Asparagus officinalis] | 0 |
| P93756 | G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 OS=Arabidopsis thaliana OX=3702 GN=SD31 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2I0ADE7 | Receptor-like serine/threonine-protein kinase OS=Apostasia shenzhenica OX=1088818 GN=SD31 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36152 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4666 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004852, Ah021758 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g061340, BVRB_4g071120 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018400 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl02660, Sgl02661, Sgl02676, Sgl07820, Sgl07821, Sgl07834 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010550, gene:ENSEOMG00000012970 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0020780, CQ.Regalona.r1.3BG0021590 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30086000 |
| Apiaceae | Apium graveolens | 2 | Ag3G01432, Ag5G02797 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G012200 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703682, gene-LOC103704599, gene-LOC120109070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.938.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G08554, Ftri16G26114 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G41890.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016288m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g24160.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g003790.2N, BniB08g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1084 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1231 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g20570 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2469, evm.TU.LG09.398 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1180, evm.TU.LG21.810 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g05470 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1185 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6434 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-580 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4241 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.337 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016913 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10975 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13383 |
| Salicaceae | Populus euphratica | 3 | populus_peu04450, populus_peu10978, populus_peu26117 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634841 |
| Solanaceae | Solanum chilense | 1 | SOLCI002139600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015303 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12863 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G1919, TC05G1920 |