Basic Information
Locus ID:
AsparagusV1_08.89.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1169147 | 1185075 | + | AsparagusV1_08.89.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 76,190.29 Da | 40.37 | 88.05 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 168 | 224 | 5.89622E-29 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 233 | 586 | 1.0E-35 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 185 | 222 | 3.3E-9 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 159 | 224 | 9.9E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 87 | 586 | 2.28E-68 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 88 | 586 | 2.0E-204 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 387 | 561 | 2.0E-204 | - |
| SMART | SM00298 | chromo_7 | 168 | 227 | 9.3E-7 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 237 | 586 | 1.6E-31 | IPR001525 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 127 | 602 | 36.347118 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 169 | 222 | 12.394601 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 239 | 251 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 192 | 212 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 328 | 341 | 6.1E-5 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 282 | 296 | 6.1E-5 | IPR001525 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_039134810.1 | DNA (cytosine-5)-methyltransferase CMT2-like isoform X2 [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q5KQL9 | DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B9ABK9 | DNA (cytosine-5-)-methyltransferase OS=Phoenix dactylifera OX=42345 GN=LOC103707986 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology