Basic Information
Locus ID:
AsparagusV1_08.689.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 13936533 | 13940611 | - | AsparagusV1_08.689.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 38,571.87 Da | 44.91 | 85.95 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 85 | 133 | 4.98955E-16 | - |
| Pfam | PF12906 | RING-variant domain | 85 | 132 | 3.1E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 82 | 137 | 9.42E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 146 | 9.3E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 84 | 133 | 1.6E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 77 | 139 | 20.569353 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 32 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_020244615.1 | uncharacterized protein LOC109822783 isoform X1 [Asparagus officinalis] | 0 |
| TrEMBL | A0A804IJK3 | RING-CH-type domain-containing protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology