Basic Information
Locus ID:
AsparagusV1_08.401.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
E3 ubiquitin-protein ligase XBOS33
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 7153281 | 7156823 | + | AsparagusV1_08.401.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 44,543.61 Da | 38.54 | 92.28 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 98 | 5.0E-13 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 187 | 278 | 6.2E-8 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 15 | 278 | 7.31E-45 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 319 | 380 | 2.44E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 155 | 274 | 6.1E-19 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 10 | 154 | 9.2E-33 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 311 | 383 | 1.4E-6 | IPR013083 |
| SMART | SM00248 | ANK_2a | 111 | 142 | 0.64 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 2.5E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 225 | 257 | 0.036 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.0064 | IPR002110 |
| SMART | SM00248 | ANK_2a | 181 | 210 | 0.016 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 77 | 104 | 10.020136 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.45228 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 225 | 257 | 10.4992 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 181 | 213 | 9.190411 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 10.81972 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 225 | 250 | 10.28545 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.57534 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 324 | 374 | 9.273124 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 339 | 348 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_020244924.1 | E3 ubiquitin-protein ligase XBAT33-like [Asparagus officinalis] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7INB0 | RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_005802 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology