Basic Information
Locus ID:
AsparagusV1_08.39.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 616788 | 618551 | + | AsparagusV1_08.39.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 65,148.84 Da | 40.37 | 108.64 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 308 | 578 | 3.77E-26 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 56 | 2.09E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 105 | 338 | 3.4E-29 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 88 | 304 | 2.1E-32 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 21 | 60 | 2.1E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 445 | 581 | 1.1E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 305 | 444 | 3.3E-13 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 419 | 444 | 310.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 527 | 552 | 51.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 131 | 156 | 28.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 475 | 500 | 540.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 501 | 525 | 130.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 157 | 182 | 7.0E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 209 | 234 | 0.001 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 183 | 208 | 51.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 334 | 3.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 393 | 418 | 660.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 105 | 130 | 230.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 448 | 473 | 8.1 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_020240697.1 | EIN3-binding F-box protein 2-like [Asparagus officinalis] | 0 |
| TrEMBL | A0A1U7ZJE7 | EIN3-binding F-box protein 1-like OS=Nelumbo nucifera OX=4432 GN=LOC104593526 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology