Basic Information
Locus ID:
AsparagusV1_08.375.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 6712923 | 6714593 | - | AsparagusV1_08.375.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 62,194.87 Da | 42.80 | 109.05 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 26 | 60 | 5.8E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 61 | 1.44E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 124 | 509 | 8.3E-30 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 443 | 554 | 5.7E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 298 | 442 | 1.1E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 21 | 274 | 9.6E-30 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 160 | 184 | 18.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 29 | 70 | 0.0051 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 185 | 210 | 0.0079 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 134 | 159 | 22.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 468 | 493 | 15.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 211 | 236 | 4.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 106 | 133 | 200.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 332 | 357 | 540.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 494 | 518 | 5.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 413 | 438 | 33.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 441 | 466 | 62.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24390.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_020241125.1 | EIN3-binding F-box protein 1-like isoform X1 [Asparagus officinalis] | 0 |
| TrEMBL | A0A0K9PR10 | F-box family protein OS=Zostera marina OX=29655 GN=ZOSMA_17G00680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.375.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g10740 |
| Poaceae | Echinochloa crus-galli | 1 | BH03.2836 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0482630 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G013880, Chr10G013900, Chr10G013910, Chr11G008410 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG059180 |
| Poaceae | Zea mays | 2 | Zm00001eb241470_P001, Zm00001eb319400_P001 |