halophFGD

Basic Information

Locus ID: AsparagusV1_08.3546.V1.1

Species & Taxonomic ID: Asparagus officinalis & 4686

Genome Assembly: GCA_001876935.1

Description: Belongs to the peptidase A1 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	129901643	129906009	-	AsparagusV1_08.3546.V1.1

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.39	40,982.88 Da	69.97	74.51	-0.33

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF06547	Protein of unknown function (DUF1117)	192	235	6.6E-25	IPR010543

Best hit

Source	Best Hit ID	Description
TAIR	AT5G59550.1	zinc finger (C3HC4-type RING finger) family protein.
RefSeq	XP_039145250.1	LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase RHC2A [Dioscorea cayenensis subsp. rotundata]
Swiss-Prot	Q940T5	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1
TrEMBL	A0A8K0IRZ4	RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_12G008000 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg34215, jg9951
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15452, gene_23776
Amaranthaceae	Atriplex hortensis	2	Ah010997, Ah035145
Amaranthaceae	Beta vulgaris	1	BVRB_2g025180
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg21280, Sbi_jg22579, Sbi_jg31869, Sbi_jg57467
Amaranthaceae	Salicornia europaea	2	Seu_jg16463, Seu_jg25154
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00016331, GOSA_00023881
Amaranthaceae	Suaeda glauca	4	Sgl54059, Sgl59396, Sgl62557, Sgl67104
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007619, gene:ENSEOMG00000018546 ... gene:ENSEOMG00000019307, gene:ENSEOMG00000020780, gene:ENSEOMG00000026829, gene:ENSEOMG00000052130
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.1BG0018610, CQ.Regalona.r1.2AG0020380 ... CQ.Regalona.r1.5AG0013890
Anacardiaceae	Pistacia vera	1	pistato.v30270350
Apiaceae	Apium graveolens	5	Ag10G01180, Ag10G01564, Ag11G04198, Ag2G01879, Ag8G00504
Arecaceae	Cocos nucifera	4	COCNU_04G001570, COCNU_04G015700, COCNU_12G008000 ... COCNU_16G008160
Arecaceae	Phoenix dactylifera	4	gene-LOC103697270, gene-LOC103704154, gene-LOC103715661 ... gene-LOC103716743
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.3546.V1.1
Asteraceae	Flaveria trinervia	8	Ftri10G17376, Ftri11G03457, Ftri15G04999, Ftri17G21327 ... Ftri4G02333, Ftri6G25733, Ftri9G18097, FtriNA17619
Brassicaceae	Arabidopsis thaliana	4	AT2G39720.1, AT2G44330.1, AT3G46620.1, AT5G59550.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10001728m.g.v1.0, Thhalv10002566m.g.v1.0 ... Thhalv10013762m.g.v1.0, Thhalv10016765m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp4g21980.v2.2, Sp4g26390.v2.2, Sp5g15060.v2.2 ... Sp6g21250.v2.2
Brassicaceae	Brassica nigra	9	BniB01g005540.2N, BniB02g039150.2N, BniB05g039130.2N ... BniB06g005120.2N, BniB07g004460.2N, BniB08g012340.2N, BniB08g025520.2N, BniB08g028900.2N, BniB08g059300.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G1138, Ceq08G1133
Casuarinaceae	Casuarina glauca	2	Cgl08G1156, Cgl08G2211
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g17620, gene.Cymno05g18930
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g34260, gene.Thate07g14050
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-3991
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1199, evm.TU.LG02.1758
Plantaginaceae	Plantago ovata	2	Pov_00016212, Pov_00040045
Poaceae	Echinochloa crus-galli	4	AH01.4191, AH05.713, BH05.776, CH05.897
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0242730, gene-QOZ80_3BG0285460 ... gene-QOZ80_5AG0408150, gene-QOZ80_5BG0456540
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0004730.1.CDS1 ... HORVU.MOREX.r3.3HG0259010.1.CDS1, HORVU.MOREX.r3.3HG0328410.1.CDS1, HORVU.MOREX.r3.4HG0388680.1.CDS1
Poaceae	Lolium multiflorum	4	gene-QYE76_008875, gene-QYE76_014968, gene-QYE76_059086 ... gene-QYE76_069043
Poaceae	Oryza coarctata	5	Oco02G032210, Oco05G009420, Oco06G009770, Oco09G000500 ... Oco10G000550
Poaceae	Oryza sativa	4	LOC_Os01g74040.1, LOC_Os03g16480.1, LOC_Os05g01940.1 ... LOC_Os10g03920.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G403000, gene-BS78_05G015200 ... gene-BS78_09G010100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0100189, Pt_Chr0601116
Poaceae	Sporobolus alterniflorus	6	Chr01G013860, Chr01G030870, Chr07G003960, Chr12G008750 ... Chr12G022980, Chr18G002830
Poaceae	Thinopyrum elongatum	6	Tel1E01G066600, Tel2E01G320800, Tel3E01G890800 ... Tel4E01G367100, Tel5E01G397600, Tel7E01G129900
Poaceae	Triticum dicoccoides	10	gene_TRIDC1AG003110, gene_TRIDC1BG003930 ... gene_TRIDC1BG050320, gene_TRIDC2BG038740, gene_TRIDC3AG020570, gene_TRIDC3AG074580, gene_TRIDC3BG085930, gene_TRIDC4AG010550, gene_TRIDC4AG013060, gene_TRIDC4BG037310
Poaceae	Triticum aestivum	8	TraesCS1A02G029800.1.cds1, TraesCS1B02G036900.1.cds1 ... TraesCS1D02G030300.1.cds1, TraesCS3B02G595200.1.cds1, TraesCS3D02G532300.1.cds1, TraesCS4A02G095800.1.cds1, TraesCS4B02G209100.1.cds1, TraesCS4D02G209500.1.cds1
Poaceae	Zea mays	3	Zm00001eb012180_P001, Zm00001eb266970_P001 ... Zm00001eb397770_P001
Poaceae	Zoysia japonica	3	nbis-gene-18383, nbis-gene-3763, nbis-gene-48873
Poaceae	Zoysia macrostachya	3	Zma_g26255, Zma_g27553, Zma_g3934
Portulacaceae	Portulaca oleracea	4	evm.TU.LG05.911, evm.TU.LG05.912, evm.TU.LG25.426 ... evm.TU.LG25.427
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g38770
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_11_RagTag.381, evm.TU.Scaffold_12_RagTag.225 ... evm.TU.Scaffold_13_RagTag.884, evm.TU.Scaffold_1_RagTag.1702, evm.TU.Scaffold_2_RagTag.727, evm.TU.Scaffold_4_RagTag.1745
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-24577, nbisL1-mrna-25988, nbisL1-mrna-30133 ... nbisL1-mrna-4454
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-1471, nbisL1-mrna-15286, nbisL1-mrna-19553 ... nbisL1-mrna-20171, nbisL1-mrna-3445, nbisL1-mrna-9871
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16258, nbisL1-mrna-19509, nbisL1-mrna-3785 ... nbisL1-mrna-4548
Rhizophoraceae	Kandelia candel	6	add.evm.TU.utg000005l.68, add.evm.TU.utg000008l.371 ... add.evm.TU.utg000009l.422, add.evm.TU.utg000015l.213, add.evm.TU.utg000027l.207, evm.TU.utg000016l.629
Rhizophoraceae	Kandelia obovata	4	Maker00001085, Maker00010261, Maker00015247, Maker00016752
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-16947, nbisL1-mrna-17539, nbisL1-mrna-18502 ... nbisL1-mrna-18947, nbisL1-mrna-21886
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-11734, nbisL1-mrna-13666, nbisL1-mrna-19556 ... nbisL1-mrna-20897, nbisL1-mrna-5988, nbisL1-mrna-9437
Salicaceae	Populus euphratica	5	populus_peu02096, populus_peu06452, populus_peu11315 ... populus_peu20308, populus_peu35703
Solanaceae	Lycium barbarum	2	gene-LOC132605851, gene-LOC132614035
Solanaceae	Solanum chilense	2	SOLCI001796000, SOLCI002093400
Solanaceae	Solanum pennellii	2	gene-LOC107018270, gene-LOC107023813
Tamaricaceae	Reaumuria soongarica	3	STRG.13220_chr07_-, STRG.14962_chr08_-, STRG.3068_chr01_-
Tamaricaceae	Tamarix chinensis	17	TC01G1198, TC01G1691, TC02G0309, TC02G2560, TC04G0504 ... TC05G0447, TC05G0559, TC05G0666, TC05G1750, TC07G0433, TC07G1631, TC08G0817, TC08G0829, TC09G1251, TC11G1100, TC12G0220, TC12G1218
Zosteraceae	Zostera marina	4	Zosma01g25450.v3.1, Zosma03g28880.v3.1, Zosma03g31110.v3.1 ... Zosma03g31120.v3.1