Basic Information
Locus ID:
AsparagusV1_08.3440.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 128111081 | 128118248 | - | AsparagusV1_08.3440.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.41 | 235,979.31 Da | 50.64 | 72.11 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 669 | 751 | 1.65452E-25 | - |
| Pfam | PF02178 | AT hook motif | 1166 | 1176 | 2.3 | IPR017956 |
| Pfam | PF02178 | AT hook motif | 1208 | 1217 | 0.25 | IPR017956 |
| Pfam | PF02178 | AT hook motif | 1227 | 1236 | 0.17 | IPR017956 |
| Pfam | PF00855 | PWWP domain | 665 | 744 | 4.8E-16 | IPR000313 |
| Pfam | PF02178 | AT hook motif | 1104 | 1114 | 0.67 | IPR017956 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 663 | 768 | 4.33E-24 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 658 | 750 | 4.4E-22 | - |
| SMART | SM00384 | AT_hook_2 | 1104 | 1116 | 0.54 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 1166 | 1178 | 1.3 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 1208 | 1220 | 0.27 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 1227 | 1239 | 0.41 | IPR017956 |
| SMART | SM00293 | PWWP_4 | 665 | 726 | 2.9E-7 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 667 | 728 | 14.075603 | IPR000313 |
| PRINTS | PR00929 | AT-hook-like domain signature | 1206 | 1217 | 2.6E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 1225 | 1235 | 2.6E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 1166 | 1176 | 2.6E-6 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 891 | 949 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1682 | 1717 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 639 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1122 | 1137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1098 | 1240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 891 | 914 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1681 | 1717 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 633 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1222 | 1237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09670.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_020276811.1 | uncharacterized protein LOC109851190 isoform X1 [Asparagus officinalis] | 0 |
| Q9SF36 | PWWP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PDP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0ITG5 | PWWP domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_12G006970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology