Basic Information
Locus ID:
AsparagusV1_08.3298.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
histone ubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 124858720 | 124859675 | - | AsparagusV1_08.3298.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.16 | 11,842.35 Da | 75.87 | 58.80 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 8 | 51 | 2.7E-6 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 51 | 4.35E-13 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 55 | 3.2E-14 | IPR016135 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 4 | 108 | 12.945218 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 74 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14400.1 | ubiquitin carrier protein 1. ubiquitin carrier protein | 0 |
| RefSeq | XP_020243610.1 | ubiquitin-conjugating enzyme E2 7-like [Asparagus officinalis] | 0 |
| P35130 | Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa OX=3879 GN=UBC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2Z6PE37 | UBC core domain-containing protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_193190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology