Basic Information
Locus ID:
AsparagusV1_08.3122.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING finger and CHY zinc finger domain-containing protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 120536196 | 120541413 | - | AsparagusV1_08.3122.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 38,736.26 Da | 47.15 | 72.15 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 224 | 267 | 4.0E-8 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 272 | 329 | 9.4E-25 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 96 | 170 | 1.4E-20 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 224 | 276 | 3.26E-11 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 161 | 218 | 2.48E-20 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 93 | 159 | 4.45E-18 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 212 | 294 | 8.6E-12 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 295 | 334 | 5.9E-18 | - |
| SMART | SM00184 | ring_2 | 225 | 267 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 225 | 268 | 11.840146 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 89 | 158 | 26.342825 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 160 | 224 | 34.710461 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_020241351.1 | E3 ubiquitin-protein ligase MIEL1-like [Asparagus officinalis] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I0VYH9 | RING finger and CHY zinc finger domain-containing protein 1 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca016826 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology