Basic Information
Locus ID:
AsparagusV1_08.3105.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 120140253 | 120145058 | - | AsparagusV1_08.3105.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 97,909.04 Da | 50.71 | 46.98 | -1.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 331 | 359 | 4.6E-10 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 365 | 393 | 1.5E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 324 | 360 | 2.98E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 323 | 361 | 5.7E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 362 | 393 | 1.8E-9 | - |
| SMART | SM00547 | zf_4 | 366 | 390 | 2.2E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 333 | 357 | 5.6E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 364 | 393 | 9.574297 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 331 | 360 | 10.229244 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 335 | 354 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 368 | 387 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 712 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 593 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 848 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 718 | 842 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 684 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_020241237.1 | uncharacterized protein LOC109819771 [Asparagus officinalis] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B7BIP3 | uncharacterized protein LOC103697653 OS=Phoenix dactylifera OX=42345 GN=LOC103697653 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology