Basic Information
Locus ID:
AsparagusV1_08.2950.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 114702851 | 114709676 | + | AsparagusV1_08.2950.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 65,830.44 Da | 41.50 | 89.97 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 264 | 556 | 2.36237E-47 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 348 | 386 | 0.01 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 298 | 6.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 344 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 522 | 556 | 1.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 513 | 0.02 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 258 | 556 | 2.98E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 254 | 522 | 6.7E-58 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 523 | 582 | 2.1E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 430 | 468 | 7.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 2.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 514 | 0.81 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 0.0022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 299 | 2.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 557 | 3.1E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 428 | 190.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 524 | 560 | 11.945589 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 94 | 151 | 8.36933 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 267 | 300 | 10.311051 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 349 | 10.047417 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 524 | 560 | 14.451798 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 308 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 13.181907 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 286 | 300 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 8.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 501 | 515 | 8.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 544 | 558 | 8.6E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_020240927.1 | uncharacterized WD repeat-containing protein C343.04c-like isoform X2 [Asparagus officinalis] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EIF4 | WD repeat-containing protein 26 homolog OS=Asparagus officinalis OX=4686 GN=A4U43_C06F390 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology