halophFGD

Basic Information

Locus ID: AsparagusV1_08.2911.V1.1

Species & Taxonomic ID: Asparagus officinalis & 4686

Genome Assembly: GCA_001876935.1

Description: alpha-amylase activity

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	113579346	113580904	+	AsparagusV1_08.2911.V1.1

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.09	16,118.52 Da	37.05	73.09	-0.60

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

KEGG Pathway

KO Term:

K00600 (glycine hydroxymethyltransferase [EC:2.1.2.1])

Pathway:

ko00260 (Glycine, serine and threonine metabolism) map00260 (Glycine, serine and threonine metabolism) ko00460 (Cyanoamino acid metabolism) map00460 (Cyanoamino acid metabolism) ko00630 (Glyoxylate and dicarboxylate metabolism) map00630 (Glyoxylate and dicarboxylate metabolism) ko00670 (One carbon pool by folate) map00670 (One carbon pool by folate) ko00680 (Methane metabolism) map00680 (Methane metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids) ko01523 (Antifolate resistance) map01523 (Antifolate resistance)

Module:

M00140 (C1-unit interconversion, prokaryotes) M00141 (C1-unit interconversion, eukaryotes) M00346 (Formaldehyde assimilation, serine pathway) M00532 (Photorespiration)

Reaction:

R00945 (5,10-Methylenetetrahydrofolate + Glycine + H2O <=> Tetrahydrofolate + L-Serine) R09099 (L-Serine + 5,6,7,8-Tetrahydromethanopterin <=> 5,10-Methylenetetrahydromethanopterin + Glycine + H2O)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G05390.1
RefSeq	XP_020244672.1	uncharacterized protein LOC109822827 [Asparagus officinalis]
TrEMBL	A0A5P1FVS9	Methyltransf_11 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F27340 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg1962, jg26570
Aizoaceae	Mesembryanthemum crystallinum	1	gene_11989
Amaranthaceae	Atriplex hortensis	1	Ah005772
Amaranthaceae	Beta vulgaris	1	BVRB_4g081150
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg17101, Sbi_jg61649
Amaranthaceae	Salicornia europaea	1	Seu_jg364
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00015323
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000011953, gene:ENSEOMG00000026049
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4AG0008410, CQ.Regalona.r1.4BG0008520
Anacardiaceae	Pistacia vera	3	pistato.v30005080, pistato.v30083590, pistato.v30192800
Apiaceae	Apium graveolens	2	Ag1G00516, Ag6G00016
Arecaceae	Cocos nucifera	2	COCNU_05G010700, COCNU_05G010710
Arecaceae	Phoenix dactylifera	2	gene-LOC103703787, gene-LOC103718547
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.1863.V1.1, AsparagusV1_01.2734.V1.1 ... AsparagusV1_05.1032.V1.1, AsparagusV1_08.2911.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G18704, Ftri15G28087
Brassicaceae	Arabidopsis thaliana	2	AT3G05390.1, AT4G01240.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10020681m.g.v1.0, Thhalv10028611m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g04250.v2.2, Sp6g00880.v2.2
Brassicaceae	Brassica nigra	4	BniB01g058200.2N, BniB05g059370.2N, BniB07g062420.2N ... BniB07g062440.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G1201, Ceq06G1190
Casuarinaceae	Casuarina glauca	2	Cgl02G1241, Cgl06G1244
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g10590
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate06g07660
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6517
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.2453, evm.TU.LG04.789
Plantaginaceae	Plantago ovata	2	Pov_00039258, Pov_00039275
Plumbaginaceae	Limonium bicolor	1	Lb1G06683
Poaceae	Echinochloa crus-galli	3	AH06.1515, BH06.1503, CH06.1650
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0520610, gene-QOZ80_6BG0473090
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0677200.1.CDS1
Poaceae	Lolium multiflorum	1	gene-QYE76_029774
Poaceae	Oryza coarctata	1	Oco11G009080
Poaceae	Oryza sativa	1	LOC_Os06g27980.1
Poaceae	Paspalum vaginatum	1	gene-BS78_K081300
Poaceae	Sporobolus alterniflorus	2	Chr10G002660, Chr11G016140
Poaceae	Thinopyrum elongatum	1	Tel7E01G420300
Poaceae	Triticum dicoccoides	2	gene_TRIDC7AG030190, gene_TRIDC7BG020980
Poaceae	Triticum aestivum	2	TraesCS7A02G234400.1.cds1, TraesCS7B02G132700.1.cds1
Poaceae	Zea mays	1	Zm00001eb260260_P001
Poaceae	Zoysia japonica	1	nbis-gene-43799
Poaceae	Zoysia macrostachya	1	Zma_g31873
Portulacaceae	Portulaca oleracea	3	evm.TU.LG14.1866, evm.TU.LG18.1237, evm.TU.LG20.646
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g25120, gene.Posoc08g13580
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_6_RagTag.395, evm.TU.Scaffold_6_RagTag.396
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-10783, nbisL1-mrna-10801, nbisL1-mrna-15263 ... nbisL1-mrna-2750, nbisL1-mrna-2829
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-5118
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-5217
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-18848
Salicaceae	Populus euphratica	3	populus_peu09375, populus_peu15715, populus_peu31617
Solanaceae	Lycium barbarum	3	gene-LOC132600082, gene-LOC132634022, gene-LOC132645519
Solanaceae	Solanum chilense	3	SOLCI001805600, SOLCI001845500, SOLCI004312300
Solanaceae	Solanum pennellii	4	gene-LOC107014185, gene-LOC107015996, gene-LOC107016023 ... gene-LOC107031656
Tamaricaceae	Reaumuria soongarica	3	gene_1398, gene_17069, gene_6393
Tamaricaceae	Tamarix chinensis	3	TC01G0928, TC02G1475, TC03G2184
Zosteraceae	Zostera marina	6	Zosma01g01860.v3.1, Zosma02g07540.v3.1, Zosma02g08700.v3.1 ... Zosma04g06790.v3.1, Zosma04g13910.v3.1, Zosma06g00860.v3.1