Basic Information
Locus ID:
AsparagusV1_08.2701.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 106440611 | 106446177 | + | AsparagusV1_08.2701.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 122,100.63 Da | 51.34 | 72.20 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 162 | 258 | 1.12825E-46 | - |
| CDD | cd13999 | STKc_MAP3K-like | 836 | 1093 | 1.61588E-118 | - |
| Pfam | PF00564 | PB1 domain | 175 | 259 | 3.6E-20 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 831 | 1093 | 2.7E-64 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 823 | 1092 | 1.37E-79 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 175 | 264 | 6.45E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 918 | 1106 | 1.3E-55 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 177 | 261 | 6.6E-13 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 823 | 917 | 2.2E-26 | - |
| SMART | SM00666 | PB1_new | 173 | 260 | 4.9E-32 | IPR000270 |
| SMART | SM00220 | serkin_6 | 830 | 1099 | 8.7E-62 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 830 | 1098 | 41.926403 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 836 | 861 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 955 | 967 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 912 | 925 | 2.7E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 949 | 967 | 2.7E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1064 | 1086 | 2.7E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1020 | 1042 | 2.7E-14 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 41 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35050.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_020244178.1 | uncharacterized protein LOC109822392 [Asparagus officinalis] | 0 |
| O64768 | RAF-like serine/threonine-protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=RAF24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1ELF2 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F3420 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology