Basic Information
Locus ID:
AsparagusV1_08.2685.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 106018189 | 106024345 | - | AsparagusV1_08.2685.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.50 | 36,183.71 Da | 40.70 | 98.98 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 31 | 232 | 4.87552E-110 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 47 | 212 | 7.8E-21 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 151 | 323 | 1.94E-18 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 27 | 224 | 8.52E-41 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 233 | 324 | 1.2E-20 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 8 | 232 | 1.3E-89 | IPR027417 |
| SMART | SM00487 | ultradead3 | 39 | 241 | 1.1E-33 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 33 | 323 | 3.0E-106 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 51 | 225 | 23.907532 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 241 | 324 | 8.721325 | IPR001650 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_020243413.1 | ATP-dependent DNA helicase Q-like 3 [Asparagus officinalis] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A178UU35 | (thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=At4g35740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology