Basic Information
Locus ID:
AsparagusV1_08.2658.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Nucleolysin TIAR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 104985880 | 104992168 | + | AsparagusV1_08.2658.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 46,074.13 Da | 52.66 | 68.23 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 59 | 129 | 3.53682E-35 | - |
| CDD | cd12354 | RRM3_TIA1_like | 262 | 336 | 7.65162E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 143 | 217 | 3.85022E-48 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 59 | 125 | 2.6E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 144 | 214 | 1.2E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 264 | 329 | 2.9E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 255 | 341 | 3.36E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 56 | 221 | 5.16E-44 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 141 | 240 | 5.3E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 241 | 340 | 3.5E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 140 | 3.2E-25 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 263 | 332 | 4.5E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 58 | 127 | 3.3E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 143 | 216 | 2.0E-23 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 262 | 336 | 15.852027 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 142 | 220 | 17.284681 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 57 | 131 | 14.794592 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_020241014.1 | oligouridylate-binding protein 1-like [Asparagus officinalis] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1ELJ3 | Oligouridylate-binding protein 1-like OS=Asparagus officinalis OX=4686 GN=A4U43_C06F3820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology