Basic Information
Locus ID:
AsparagusV1_08.1964.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 70661853 | 70666244 | - | AsparagusV1_08.1964.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 68,913.39 Da | 59.59 | 64.43 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 477 | 561 | 3.0E-16 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 579 | 609 | 9.1E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 477 | 562 | 3.0E-25 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 397 | - | - |
| Coils | Coil | Coil | 469 | 503 | - | - |
| Coils | Coil | Coil | 515 | 535 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_020241311.1 | titin homolog [Asparagus officinalis] | 0 |
| TrEMBL | A0A6I9R8D3 | titin homolog OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105045024 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology