HalophFGD

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Basic Information
Locus ID: AsparagusV1_08.1881.V1.1
Species & Taxonomic ID: Asparagus officinalis & 4686
Genome Assembly: GCA_001876935.1
Description: Pentacotripeptide-repeat region of PRORP
Maps and Mapping Data
Chromosome Start End Strand ID
chr8 65638612 65640216 - AsparagusV1_08.1881.V1.1
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.85 61,667.04 Da 44.44 87.60 -0.21
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF12854 PPR repeat 253 284 1.0E-8 IPR002885
Pfam PF13812 Pentatricopeptide repeat domain 413 442 0.0021 IPR002885
Pfam PF13812 Pentatricopeptide repeat domain 456 511 3.4E-5 IPR002885
Pfam PF01535 PPR repeat 225 251 0.42 IPR002885
Pfam PF13041 PPR repeat family 361 409 1.0E-14 IPR002885
Pfam PF13041 PPR repeat family 290 338 1.8E-12 IPR002885
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 426 530 1.6E-14 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 283 354 1.2E-20 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 355 425 3.1E-19 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 71 282 4.6E-24 IPR011990
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 399 432 1.3E-7 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 328 361 6.5E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 293 327 9.4E-9 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 365 397 2.9E-9 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 259 290 8.5E-9 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 469 500 0.001 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 256 290 13.186502 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 466 500 10.248873 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 396 430 11.268274 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 431 465 8.681407 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 291 325 10.840783 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 361 395 13.000159 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 326 360 10.785976 IPR002885
Coils Coil Coil 510 530 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G22670.1 Pentatricopeptide repeat (PPR) superfamily protein. 0
RefSeq XP_020241941.1 pentatricopeptide repeat-containing protein At3g22670, mitochondrial [Asparagus officinalis] 0
Swiss-Prot Q9LUJ4 Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22670 PE=2 SV=1 0
TrEMBL A0A6J0PG47 pentatricopeptide repeat-containing protein At3g22670, mitochondrial isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105042322 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg5752, jg9557
Aizoaceae Mesembryanthemum crystallinum 2 gene_3540, gene_5373
Amaranthaceae Beta vulgaris 1 BVRB_6g151540
Amaranthaceae Salicornia bigelovii 4 Sbi_jg26547, Sbi_jg34020, Sbi_jg42730, Sbi_jg45355
Amaranthaceae Salicornia europaea 2 Seu_jg11218, Seu_jg15074
Amaranthaceae Suaeda aralocaspica 1 GOSA_00002583
Amaranthaceae Suaeda glauca 4 Sgl35089, Sgl40474, Sgl73833, Sgl77335
Amaranthaceae Chenopodium album 4 gene:ENSEOMG00000002884, gene:ENSEOMG00000006357 ...
gene:ENSEOMG00000015373, gene:ENSEOMG00000037249
Amaranthaceae Chenopodium quinoa 3 CQ.Regalona.r1.6AG0003540, CQ.Regalona.r1.6BG0003500 ...
CQ.Regalona.r1.7AG0010320
Anacardiaceae Pistacia vera 2 pistato.v30228080, pistato.v30236350
Apiaceae Apium graveolens 2 Ag1G01844, Ag5G02278
Arecaceae Cocos nucifera 3 COCNU_03G001310, COCNU_03G001330, COCNU_04G007320
Arecaceae Phoenix dactylifera 2 gene-LOC103718091, gene-LOC103718684
Asparagaceae Asparagus officinalis 2 AsparagusV1_03.2689.V1.1, AsparagusV1_08.1881.V1.1
Asteraceae Flaveria trinervia 2 Ftri15G22017, Ftri9G15803
Brassicaceae Arabidopsis thaliana 2 AT3G04130.1, AT3G22670.1
Brassicaceae Eutrema salsugineum 2 Thhalv10020419m.g.v1.0, Thhalv10020548m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp3g03100.v2.2, Sp3g20430.v2.2
Brassicaceae Brassica nigra 4 BniB01g059340.2N, BniB03g024780.2N, BniB07g032460.2N ...
BniB07g032470.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq07G1278
Casuarinaceae Casuarina glauca 1 Cgl07G1351
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno05g03570, gene.Cymno09g09580
Hydrocharitaceae Thalassia testudinum 1 gene.Thate03g04160
Nitrariaceae Nitraria sibirica 2 evm.TU.LG03.712, evm.TU.LG11.999
Plantaginaceae Plantago ovata 2 Pov_00021764, Pov_00022238
Plumbaginaceae Limonium bicolor 2 Lb1G00954, Lb1G08048
Poaceae Echinochloa crus-galli 4 BH01.2664, BH01.761, CH01.757, Contig309.108
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_2AG0136490, gene-QOZ80_2BG0192130 ...
gene-QOZ80_3AG0216460, gene-QOZ80_3BG0261780
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.5HG0510080.1.CDS1 ...
HORVU.MOREX.r3.6HG0592070.1.CDS1
Poaceae Lolium multiflorum 2 gene-QYE76_023481, gene-QYE76_061911
Poaceae Oryza coarctata 3 Oco03G014520, Oco04G014970, Oco06G024280
Poaceae Oryza sativa 1 LOC_Os02g38950.1
Poaceae Paspalum vaginatum 2 gene-BS78_01G083600, gene-BS78_04G186700
Poaceae Sporobolus alterniflorus 4 Chr01G005430, Chr09G012410, Chr12G037810, Chr13G008330
Poaceae Thinopyrum elongatum 1 Tel6E01G415700
Poaceae Triticum dicoccoides 4 gene_TRIDC5AG056230, gene_TRIDC5BG060280 ...
gene_TRIDC6AG033070, gene_TRIDC6BG039410
Poaceae Triticum aestivum 6 TraesCS5A02G384400.1.cds1, TraesCS5B02G389200.1.cds1 ...
TraesCS5D02G394000.1.cds1, TraesCS6A02G213800.1.cds1, TraesCS6B02G243800.1.cds1, TraesCS6D02G196400.1.cds1
Poaceae Zea mays 2 Zm00001eb057030_P001, Zm00001eb246390_P001
Poaceae Zoysia japonica 1 nbis-gene-23463
Poaceae Zoysia macrostachya 2 Zma_g13832, Zma_g494
Portulacaceae Portulaca oleracea 2 evm.TU.LG02.2560, evm.TU.LG13.94
Posidoniaceae Posidonia oceanica 3 gene.Posoc01g07610, gene.Posoc04g01610, gene.Posoc05g00670
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_17_RagTag.159, evm.TU.Scaffold_6_RagTag.775
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-15921, nbisL1-mrna-23199
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-16773, nbisL1-mrna-9301
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-14672, nbisL1-mrna-649
Rhizophoraceae Kandelia candel 2 add.evm.TU.utg000011l.190, add.evm.TU.utg000013l.29
Rhizophoraceae Kandelia obovata 1 Maker00006512
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-19530, nbisL1-mrna-22921
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-15954, nbisL1-mrna-3499
Salicaceae Populus euphratica 5 populus_peu07647, populus_peu21418, populus_peu21419 ...
populus_peu21420, populus_peu21689
Solanaceae Lycium barbarum 2 gene-LOC132609668, gene-LOC132641233
Solanaceae Solanum chilense 2 SOLCI004820900, SOLCI007024500
Solanaceae Solanum pennellii 2 gene-LOC107020744, gene-LOC107031368
Tamaricaceae Reaumuria soongarica 2 STRG.19726_chr07_+, gene_15533
Tamaricaceae Tamarix chinensis 2 TC04G0518, TC09G0412
Zosteraceae Zostera marina 3 Zosma01g34550.v3.1, Zosma01g40775.v3.1, Zosma04g00720.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.