Basic Information
Locus ID:
AsparagusV1_08.1855.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 63280990 | 63302846 | + | AsparagusV1_08.1855.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 99,872.84 Da | 48.70 | 59.56 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 47 | 236 | 5.32E-9 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 629 | 669 | 3.16E-6 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 629 | 674 | 1.2E-10 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 20 | 262 | 2.5E-6 | IPR011989 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 624 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 757 | 829 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 836 | 892 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 683 | 919 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 624 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 683 | 700 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 702 | 728 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_020241434.1 | claspin [Asparagus officinalis] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C924 | uncharacterized protein LOC103710418 OS=Phoenix dactylifera OX=42345 GN=LOC103710418 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology