Basic Information
Locus ID:
AsparagusV1_08.1575.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 46023345 | 46040993 | - | AsparagusV1_08.1575.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 64,091.28 Da | 24.98 | 99.97 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 268 | 370 | 1.01963E-24 | - |
| CDD | cd00030 | C2 | 446 | 546 | 6.35607E-26 | - |
| Pfam | PF00168 | C2 domain | 444 | 546 | 4.7E-26 | IPR000008 |
| Pfam | PF00168 | C2 domain | 266 | 370 | 4.1E-22 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 76 | 253 | 2.8E-13 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 264 | 396 | 4.27E-29 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 441 | 563 | 1.42E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 427 | 562 | 1.5E-34 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 262 | 401 | 9.3E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 267 | 367 | 1.2E-21 | IPR000008 |
| SMART | SM00239 | C2_3c | 445 | 543 | 6.0E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 427 | 544 | 20.55582 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 71 | 253 | 30.128258 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 247 | 368 | 20.704956 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 487 | 500 | 3.5E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 509 | 517 | 3.5E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 461 | 473 | 3.5E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_020240880.1 | synaptotagmin-5-like [Asparagus officinalis] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7BZW3 | synaptotagmin-5-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103706481 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology