Basic Information
Locus ID:
AsparagusV1_08.1405.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 35647976 | 35648800 | + | AsparagusV1_08.1405.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 31,175.78 Da | 47.93 | 98.17 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 49 | 82 | 1.1E-7 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 44 | 106 | 1.24E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 141 | 7.3E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 49 | 104 | 10.143551 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 68 | 77 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020242080.1 | uncharacterized protein LOC109820364 [Asparagus officinalis] | 0 |
| TrEMBL | A0A8B7CS08 | uncharacterized protein LOC103718167 OS=Phoenix dactylifera OX=42345 GN=LOC103718167 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology