Basic Information
Locus ID:
AsparagusV1_08.117.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1477815 | 1479062 | - | AsparagusV1_08.117.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 46,229.07 Da | 66.19 | 66.02 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 163 | 207 | 5.11161E-29 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 165 | 205 | 8.7E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 157 | 218 | 1.75E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 253 | 3.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 165 | 205 | 4.9E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 206 | 13.905566 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 180 | 189 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 363 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 129 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020242476.1 | putative E3 ubiquitin-protein ligase RING1a [Asparagus officinalis] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FQF7 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C01F12180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology