Basic Information
Locus ID:
AsparagusV1_08.115.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1448836 | 1464335 | + | AsparagusV1_08.115.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 171,514.30 Da | 38.96 | 78.12 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 894 | 931 | 6.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 445 | 482 | 6.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1279 | 1313 | 0.0026 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 335 | 434 | 1.1E-6 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1201 | 1467 | 3.4E-37 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 774 | 1106 | 2.09E-35 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 410 | 948 | 6.67E-40 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 1133 | 1328 | 3.7E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 746 | 989 | 6.3E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 290 | 538 | 7.8E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 542 | 700 | 5.4E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 991 | 1132 | 7.3E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1337 | 1510 | 1.2E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 439 | 482 | 7.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 526 | 0.086 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1231 | 1271 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 888 | 931 | 7.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 374 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1024 | 1064 | 7.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1274 | 1313 | 2.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 572 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 575 | 615 | 7.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 934 | 975 | 0.086 | IPR001680 |
| SMART | SM00320 | WD40_4 | 978 | 1021 | 240.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.3E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1364 | 1406 | 8.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 784 | 823 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1186 | 1228 | 140.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 448 | 491 | 11.510997 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1281 | 1322 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 897 | 936 | 9.124694 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.333894 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 897 | 940 | 11.510997 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 448 | 487 | 9.124694 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1281 | 1315 | 10.416506 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 469 | 483 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 918 | 932 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_020240735.1 | protein TPR2-like [Asparagus officinalis] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J5FEV8 | TOPLESS OS=Zingiber officinale OX=94328 GN=ZIOFF_055011 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology