Basic Information
Locus ID:
AsparagusV1_07.94.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 2370997 | 2377439 | + | AsparagusV1_07.94.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 22,191.50 Da | 45.21 | 72.79 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 95 | 145 | 1.33354E-10 | - |
| Pfam | PF12906 | RING-variant domain | 95 | 144 | 1.0E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 91 | 147 | 3.18E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 74 | 154 | 3.0E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 94 | 145 | 3.9E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 87 | 151 | 18.448565 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 59 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_020273278.1 | uncharacterized protein LOC109848265 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1E8U0 | RING-CH-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C07F940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology