Basic Information
Locus ID:
AsparagusV1_07.819.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
NTMC2T2.1
Description:
C2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 22859715 | 22863126 | + | AsparagusV1_07.819.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 32,032.31 Da | 24.41 | 109.43 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 43 | 144 | 4.62033E-22 | - |
| CDD | cd00030 | C2 | 223 | 262 | 1.23123E-4 | - |
| Pfam | PF00168 | C2 domain | 41 | 144 | 9.0E-20 | IPR000008 |
| Pfam | PF00168 | C2 domain | 221 | 262 | 1.1E-4 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 39 | 171 | 1.87E-27 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 158 | 263 | 6.55E-9 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 39 | 170 | 7.0E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 203 | 264 | 7.4E-7 | IPR035892 |
| SMART | SM00239 | C2_3c | 42 | 142 | 3.3E-19 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 22 | 143 | 18.915327 | IPR000008 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.2 | - | 0 |
| RefSeq | XP_020271652.1 | synaptotagmin-4-like [Asparagus officinalis] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EAA9 | C2 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C07F8190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology