Basic Information
Locus ID:
AsparagusV1_07.771.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 20518606 | 20537892 | + | AsparagusV1_07.771.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 101,246.03 Da | 40.60 | 83.97 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 2 | 196 | 6.35291E-95 | - |
| CDD | cd18794 | SF2_C_RecQ | 197 | 332 | 6.04809E-55 | - |
| Pfam | PF00570 | HRDC domain | 546 | 612 | 1.5E-14 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 175 | 4.3E-21 | IPR011545 |
| Pfam | PF09382 | RQC domain | 400 | 500 | 4.9E-25 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 220 | 322 | 1.2E-20 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 335 | 396 | 1.4E-11 | IPR032284 |
| Pfam | PF14493 | Helix-turn-helix domain | 653 | 743 | 7.8E-18 | IPR029491 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 394 | 502 | 1.06E-25 | IPR036390 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 53 | 337 | 5.08E-56 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 540 | 619 | 9.38E-18 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 397 | 8.4E-58 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 398 | 521 | 9.2E-36 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 3.2E-75 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 540 | 624 | 2.1E-17 | IPR044876 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 4.6E-28 | IPR001650 |
| SMART | SM00487 | ultradead3 | 10 | 207 | 2.4E-32 | IPR014001 |
| SMART | SM00341 | hrdc7 | 542 | 622 | 2.3E-8 | IPR002121 |
| SMART | SM00956 | RQC_2 | 403 | 507 | 1.5E-27 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 3 | 454 | 1.1E-153 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 23.700048 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 542 | 622 | 19.662178 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 213 | 368 | 19.680984 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 796 | 811 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 775 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 757 | 811 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_020273082.1 | uncharacterized protein LOC109848140 isoform X1 [Asparagus officinalis] | 0 |
| O34748 | ATP-dependent DNA helicase RecQ OS=Bacillus subtilis (strain 168) OX=224308 GN=recQ PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EA34 | ATP-dependent DNA helicase OS=Asparagus officinalis OX=4686 GN=A4U43_C07F7710 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology