Basic Information
Locus ID:
AsparagusV1_07.672.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
PDC3
Description:
Pyruvate decarboxylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 17675298 | 17678618 | - | AsparagusV1_07.672.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 67,891.57 Da | 47.67 | 78.14 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 424 | 606 | 6.27809E-89 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 298 | 372 | 9.2E-11 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 469 | 594 | 8.1E-16 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 152 | 243 | 8.4E-10 | IPR012001 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 298 | 401 | 1.13E-20 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 152 | 251 | 1.46E-16 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 424 | 618 | 2.68E-43 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 294 | 411 | 1.1E-29 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 418 | 605 | 1.0E-56 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 134 | 251 | 8.3E-25 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 128 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_010920798.1 | pyruvate decarboxylase 1 [Elaeis guineensis] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1EBU4 | pyruvate decarboxylase OS=Asparagus officinalis OX=4686 GN=A4U43_C07F6720 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology