Basic Information
Locus ID:
AsparagusV1_07.469.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
CPK13
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 12413795 | 12455480 | - | AsparagusV1_07.469.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 78,905.03 Da | 34.88 | 87.94 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 421 | 483 | 1.03533E-19 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 43 | 301 | 5.53888E-134 | - |
| Pfam | PF13499 | EF-hand domain pair | 420 | 483 | 5.6E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 348 | 408 | 8.6E-10 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 46 | 302 | 1.3E-74 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 330 | 508 | 2.38E-46 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 42 | 303 | 1.07E-85 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 45 | 129 | 5.7E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 130 | 310 | 3.6E-61 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 311 | 486 | 2.5E-54 | - |
| SMART | SM00054 | efh_1 | 385 | 413 | 0.14 | IPR002048 |
| SMART | SM00054 | efh_1 | 457 | 485 | 9.6E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 349 | 377 | 2.4E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 421 | 449 | 1.1E-5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 44 | 302 | 6.1E-98 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 417 | 452 | 15.406057 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 381 | 416 | 9.018011 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 44 | 302 | 48.216034 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 345 | 380 | 14.959732 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 453 | 488 | 13.983393 | IPR002048 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 50 | 73 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 358 | 370 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 430 | 442 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 164 | 176 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 466 | 478 | - | IPR018247 |
| Coils | Coil | Coil | 638 | 658 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_020276451.1 | calcium-dependent protein kinase 13-like [Asparagus officinalis] | 0 |
| Q8W4I7 | Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana OX=3702 GN=CPK13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1ECR5 | Calcium-dependent protein kinase 30 OS=Asparagus officinalis OX=4686 GN=A4U43_C07F4690 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology