Basic Information
Locus ID:
AsparagusV1_07.3896.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 149771801 | 149783700 | - | AsparagusV1_07.3896.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.06 | 79,031.60 Da | 39.70 | 91.33 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 189 | 232 | 6.10452E-7 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 339 | 537 | 2.0E-45 | IPR001245 |
| Pfam | PF01476 | LysM domain | 192 | 233 | 2.2E-5 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 315 | 602 | 3.1E-77 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 188 | 233 | 1.44E-6 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 311 | 412 | 9.0E-36 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 413 | 594 | 4.8E-48 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 188 | 243 | 6.5E-10 | IPR036779 |
| SMART | SM00257 | LysM_2 | 121 | 168 | 1.3 | IPR018392 |
| SMART | SM00257 | LysM_2 | 189 | 233 | 0.001 | IPR018392 |
| SMART | SM00220 | serkin_6 | 337 | 595 | 1.6E-25 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 337 | 608 | 37.318718 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 188 | 232 | 10.933202 | IPR018392 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 458 | 470 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27300.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_020273246.1 | G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Asparagus officinalis] | 0 |
| O81833 | G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 OS=Arabidopsis thaliana OX=3702 GN=SD11 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EM50 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C07F38960 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology