Basic Information
Locus ID:
AsparagusV1_07.364.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 8953502 | 8955913 | + | AsparagusV1_07.364.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 88,359.61 Da | 58.00 | 63.30 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 112 | 194 | 3.14999E-27 | - |
| Pfam | PF00855 | PWWP domain | 111 | 193 | 1.6E-19 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 104 | 213 | 1.81E-28 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 99 | 201 | 5.3E-26 | - |
| SMART | SM00293 | PWWP_4 | 108 | 169 | 2.2E-11 | IPR000313 |
| SMART | SM00384 | AT_hook_2 | 376 | 388 | 2.8 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 330 | 342 | 6.5 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 595 | 607 | 150.0 | IPR017956 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 110 | 171 | 16.500475 | IPR000313 |
| PRINTS | PR00929 | AT-hook-like domain signature | 330 | 340 | 7.3E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 414 | 424 | 7.3E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 374 | 385 | 7.3E-6 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 616 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 363 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 764 | 786 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09670.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_020274093.1 | uncharacterized protein LOC109848821 isoform X1 [Asparagus officinalis] | 0 |
| Q9SF36 | PWWP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PDP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1E937 | PWWP domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C07F3640 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology