Basic Information
Locus ID:
AsparagusV1_07.3580.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 144198757 | 144204309 | + | AsparagusV1_07.3580.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 39,563.86 Da | 52.21 | 76.84 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 150 | 199 | 7.4615E-31 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.09497E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 156 | 194 | 5.8E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 324 | 359 | 3.0E-9 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 3.2E-20 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 266 | 297 | 2.1E-10 | IPR015360 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 88 | 2.0E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 306 | 366 | 2.69E-13 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 153 | 204 | 2.27E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 255 | 303 | 2.75E-12 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 8.6E-27 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 266 | 297 | 1.2E-10 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 316 | 363 | 6.8E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 149 | 199 | 2.4E-21 | - |
| SMART | SM00165 | uba_6 | 156 | 196 | 2.8E-4 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 5.9E-20 | IPR000626 |
| SMART | SM00165 | uba_6 | 324 | 361 | 8.4E-8 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 367 | 1.5E-96 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 321 | 362 | 13.269807 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.805603 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 154 | 197 | 12.739671 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 268 | 290 | 4.3E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 335 | 349 | 4.3E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 350 | 365 | 4.3E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 318 | 334 | 4.3E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 232 | - | - |
| Coils | Coil | Coil | 269 | 289 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_020274712.1 | ubiquitin receptor RAD23d-like [Asparagus officinalis] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1EKI3 | Ubiquitin receptor RAD23 OS=Asparagus officinalis OX=4686 GN=A4U43_C07F35800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology