Basic Information
Locus ID:
AsparagusV1_07.3495.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 142685630 | 142703001 | - | AsparagusV1_07.3495.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 68,799.67 Da | 43.83 | 93.59 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 93 | 115 | 1.0 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 303 | 573 | 1.2E-43 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 65 | 4.5E-11 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 166 | 181 | 1.6 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 27 | 202 | 7.65E-37 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 281 | 577 | 2.32E-78 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 271 | 378 | 9.3E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 211 | 8.6E-64 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 379 | 596 | 3.4E-71 | - |
| SMART | SM00220 | serkin_6 | 302 | 576 | 1.3E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 302 | 589 | 36.654423 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 425 | 437 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 308 | 330 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34210.1 | somatic embryogenesis receptor-like kinase 2. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. | 0 |
| RefSeq | XP_020273196.1 | LRR receptor kinase BAK1-like [Asparagus officinalis] | 0 |
| B8BB68 | LRR receptor kinase BAK1 OS=Oryza sativa subsp. indica OX=39946 GN=BAK1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EHG1 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C07F34950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology