Basic Information
Locus ID:
AsparagusV1_07.3483.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 142239224 | 142252689 | - | AsparagusV1_07.3483.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 39,517.67 Da | 42.66 | 85.86 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 72 | 262 | 2.7E-86 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 70 | 263 | 1.19E-44 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 281 | 336 | 5.89E-17 | IPR023400 |
| Gene3D | G3DSA:3.30.250.10 | - | 282 | 338 | 5.4E-20 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 99 | 263 | 6.6E-66 | IPR027417 |
| SMART | SM00382 | AAA_5 | 121 | 279 | 3.9E-7 | IPR003593 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 255 | 284 | 8.907828 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 100 | 258 | 30.307652 | IPR020588 |
| PRINTS | PR00142 | RecA protein signature | 157 | 186 | 1.5E-50 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 191 | 220 | 1.5E-50 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 229 | 258 | 1.5E-50 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 309 | 326 | 1.5E-50 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_020276181.1 | DNA repair protein recA homolog 1, chloroplastic isoform X1 [Asparagus officinalis] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EH47 | DNA repair protein recA homolog 1, chloroplastic OS=Asparagus officinalis OX=4686 GN=A4U43_C07F34830 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology