Basic Information
Locus ID:
AsparagusV1_07.3406.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
TatD related DNase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 139955082 | 139965305 | + | AsparagusV1_07.3406.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 34,757.27 Da | 28.47 | 81.28 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01310 | TatD_DNAse | 19 | 293 | 4.62417E-84 | IPR001130 |
| Pfam | PF01026 | TatD related DNase | 21 | 292 | 2.0E-48 | IPR001130 |
| SUPERFAMILY | SSF51556 | Metallo-dependent hydrolases | 21 | 293 | 3.89E-65 | IPR032466 |
| Gene3D | G3DSA:3.20.20.140 | - | 1 | 298 | 9.9E-119 | - |
| PIRSF | PIRSF005902 | DNase_TatD | 1 | 296 | 2.7E-84 | IPR001130 |
| ProSitePatterns | PS01090 | TatD deoxyribonuclease family signature 2. | 140 | 150 | - | IPR018228 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52390.1 | TatD related DNase. | 0 |
| RefSeq | XP_020275647.1 | putative deoxyribonuclease TATDN1 [Asparagus officinalis] | 0 |
| Q640V9 | Deoxyribonuclease TATDN1 OS=Xenopus laevis OX=8355 GN=tatdn1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EIW3 | Deoxyribonuclease TATDN1 (Fragment) OS=Asparagus officinalis OX=4686 GN=A4U43_C07F34060 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg18890, jg33373, jg3652 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15255 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003108 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g108630 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg56536 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13756 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001828 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl32073, Sgl37372, Sgl51450, Sgl56738 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005096, gene:ENSEOMG00000020872 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0011720 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30276750 |
| Apiaceae | Apium graveolens | 1 | Ag4G01531 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G008210 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722489 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3406.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G16682 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G52390.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010578m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g09900.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g066520.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0799 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0905 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g09460 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0336s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g04710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2953 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1896 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17688 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.269, BH03.347, CH03.420 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0556050, gene-QOZ80_7BG0586990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0152160.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042555 |
| Poaceae | Oryza coarctata | 1 | Oco14G001760 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g06410.4, LOC_Os07g06440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G038100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303551 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G001310, Chr28G001110 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G458400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG033460, gene_TRIDC2BG039130 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G249700.1, TraesCS2B02G271200.1 ... |
| Poaceae | Zea mays | 8 | Zm00001eb002330_P001, Zm00001eb083350_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35751 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4753 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2772, evm.TU.LG16.898 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g20000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1062 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4125 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18170 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10161 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.608 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005969 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12517 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5690 |
| Salicaceae | Populus euphratica | 1 | populus_peu25978 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629962 |
| Solanaceae | Solanum chilense | 1 | SOLCI001038000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022993 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15994_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0669 |
| Zosteraceae | Zostera marina | 1 | Zosma06g27580.v3.1 |