Basic Information
Locus ID:
AsparagusV1_07.3390.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 139237839 | 139255040 | + | AsparagusV1_07.3390.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 128,453.87 Da | 44.86 | 77.96 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 170 | 498 | 4.06961E-166 | - |
| CDD | cd00121 | MATH | 29 | 152 | 2.89589E-39 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 597 | 849 | 4.5E-76 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 859 | 1069 | 2.2E-58 | IPR029346 |
| Pfam | PF00917 | MATH domain | 34 | 154 | 5.2E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 172 | 493 | 2.6E-46 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 167 | 523 | 1.94E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 26 | 162 | 2.13E-42 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 657 | 774 | 3.6E-45 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 775 | 872 | 4.9E-27 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 26 | 168 | 1.4E-53 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 169 | 497 | 1.4E-89 | - |
| SMART | SM00061 | math_3 | 29 | 133 | 8.1E-22 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 27 | 152 | 38.340729 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 172 | 496 | 40.403683 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 412 | 429 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 173 | 188 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| Coils | Coil | Coil | 512 | 532 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_020276593.1 | ubiquitin carboxyl-terminal hydrolase 12-like [Asparagus officinalis] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1EGX3 | ubiquitinyl hydrolase 1 OS=Asparagus officinalis OX=4686 GN=A4U43_C07F33900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology