Basic Information
Locus ID:
AsparagusV1_07.3214.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 134108367 | 134115450 | + | AsparagusV1_07.3214.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 26,048.28 Da | 51.70 | 63.15 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 9 | 232 | 6.8E-86 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 115 | 222 | 5.17E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 115 | 235 | 8.8E-45 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 121 | 223 | 24.373377 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 79 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_020276523.1 | auxin-responsive protein IAA30-like [Asparagus officinalis] | 0 |
| P0C132 | Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EGF1 | Auxin-responsive protein OS=Asparagus officinalis OX=4686 GN=A4U43_C07F32140 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology