Basic Information
Locus ID:
AsparagusV1_07.3014.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 124532081 | 124532812 | + | AsparagusV1_07.3014.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 27,686.13 Da | 44.58 | 114.69 | 0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 41 | 80 | 2.6E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 32 | 99 | 1.52E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 134 | 5.7E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 41 | 95 | 0.0078 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 41 | 96 | 10.645153 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 60 | 69 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020276065.1 | uncharacterized protein LOC109850457 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1EFX8 | RING-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C07F30140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology