Basic Information
Locus ID:
AsparagusV1_07.2967.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 121904348 | 121917481 | + | AsparagusV1_07.2967.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 71,833.36 Da | 51.07 | 88.91 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 21 | 124 | 4.2756E-45 | - |
| Pfam | PF03000 | NPH3 family | 211 | 465 | 2.9E-86 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 27 | 118 | 7.5E-8 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 117 | 5.57E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 4 | 121 | 4.1E-13 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 489 | 86.50386 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 10.261317 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 532 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 534 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_020273012.1 | LOW QUALITY PROTEIN: BTB/POZ domain-containing protein NPY2-like [Asparagus officinalis] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EFZ8 | BTB/POZ domain-containing protein NPY4 OS=Asparagus officinalis OX=4686 GN=A4U43_C07F29670 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology