Basic Information
Locus ID:
AsparagusV1_07.27.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 713448 | 727386 | + | AsparagusV1_07.27.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 83,263.47 Da | 50.55 | 86.12 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 566 | 604 | 2.2E-6 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 287 | 398 | 1.5E-7 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 164 | 424 | 1.26E-21 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 700 | 741 | 2.98E-8 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 543 | 605 | 1.82E-12 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 539 | 609 | 1.3E-8 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 167 | 428 | 1.4E-27 | IPR023214 |
| SMART | SM00577 | forpap2 | 230 | 407 | 1.0E-9 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 674 | 740 | 0.0072 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 541 | 605 | 4.9E-7 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 704 | 741 | 9.464921 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 171 | 420 | 17.014317 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 540 | 606 | 13.106365 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| Coils | Coil | Coil | 587 | 607 | - | - |
| Coils | Coil | Coil | 722 | 742 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_020276214.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Asparagus officinalis] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5P1EBI4 | protein-serine/threonine phosphatase OS=Asparagus officinalis OX=4686 GN=A4U43_C07F270 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology