Basic Information
Locus ID:
AsparagusV1_07.2648.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
UBP16
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 101222197 | 101235230 | - | AsparagusV1_07.2648.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 103,479.54 Da | 57.48 | 72.52 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 466 | 765 | 3.9E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 462 | 772 | 8.83E-86 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 458 | 775 | 1.0E-91 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 466 | 768 | 51.318703 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 467 | 482 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 375 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_020274607.1 | LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 17-like [Asparagus officinalis] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EH05 | USP domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C07F26480 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology