Basic Information
Locus ID:
AsparagusV1_07.243.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 5587560 | 5591969 | + | AsparagusV1_07.243.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 61,491.39 Da | 37.11 | 101.01 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 256 | 298 | 8.37534E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 377 | 416 | 4.1E-10 | IPR000225 |
| Pfam | PF04564 | U-box domain | 252 | 322 | 1.0E-20 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 460 | 498 | 2.2E-6 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 244 | 327 | 2.12E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 349 | 542 | 2.52E-38 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 8 | 120 | 6.5E-10 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 331 | 561 | 6.3E-41 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 252 | 324 | 2.4E-31 | IPR013083 |
| SMART | SM00185 | arm_5 | 336 | 375 | 270.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 500 | 540 | 50.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 377 | 417 | 8.4E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 459 | 499 | 0.17 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 255 | 318 | 2.2E-33 | IPR003613 |
| SMART | SM00185 | arm_5 | 418 | 458 | 0.87 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 388 | 430 | 13.002399 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 251 | 325 | 44.362953 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_020273517.1 | LOW QUALITY PROTEIN: protein spotted leaf 11-like [Asparagus officinalis] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1E8S3 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C07F2430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology