Basic Information
Locus ID:
AsparagusV1_07.2166.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Helicase conserved C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 74859992 | 74884660 | + | AsparagusV1_07.2166.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.00 | 113,207.89 Da | 43.18 | 86.93 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02585 | HAD_PMM | 759 | 993 | 1.381E-131 | IPR005002 |
| CDD | cd18787 | SF2_C_DEAD | 516 | 647 | 3.91002E-36 | - |
| CDD | cd17964 | DEADc_MSS116 | 292 | 501 | 4.71801E-90 | - |
| Pfam | PF03332 | Eukaryotic phosphomannomutase | 779 | 994 | 8.3E-107 | IPR005002 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 310 | 487 | 2.0E-42 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 536 | 637 | 5.9E-19 | IPR001650 |
| SUPERFAMILY | SSF56784 | HAD-like | 760 | 993 | 6.27E-60 | IPR036412 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 362 | 656 | 1.92E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 512 | 734 | 2.1E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 263 | 502 | 5.6E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.1000 | - | 759 | 991 | 7.9E-110 | IPR023214 |
| Gene3D | G3DSA:3.30.1240.20 | - | 837 | 938 | 7.9E-110 | IPR043169 |
| SMART | SM00487 | ultradead3 | 304 | 511 | 3.7E-50 | IPR014001 |
| SMART | SM00490 | helicmild6 | 557 | 638 | 4.3E-21 | IPR001650 |
| TIGRFAM | TIGR01484 | HAD-SF-IIB: HAD hydrolase, family IIB | 760 | 972 | 4.5E-28 | IPR006379 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 533 | 683 | 17.649387 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 316 | 499 | 29.471882 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 285 | 313 | 9.385633 | IPR014014 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 189 | - | - |
| SFLD | SFLDS00003 | Haloacid Dehalogenase | 757 | 994 | 0.0 | - |
| SFLD | SFLDF00445 | alpha-phosphomannomutase | 757 | 994 | 0.0 | IPR005002 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63250.1 | DEA(D/H)-box RNA helicase family protein. | 0 |
| RefSeq | XP_020272193.1 | LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 48-like [Asparagus officinalis] | 0 |
| Q6K7R9 | DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0826100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EDU7 | Phosphomannomutase OS=Asparagus officinalis OX=4686 GN=A4U43_C07F21660 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26861, jg29650 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23293 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036085 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g170670 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39971, Sbi_jg55301 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14363 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00011108, GOSA_00014121, GOSA_00014122 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41841, Sgl46641 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018611, gene:ENSEOMG00000035043 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0021990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30004080 |
| Apiaceae | Apium graveolens | 1 | Ag6G00164 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G007430 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719400 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.901.V1.1, AsparagusV1_06.1267.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G28088, Ftri3G17219 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G45790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001604m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g27860.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g001280.2N, BniB06g004180.2N, BniB08g029880.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2764, Ceq05G0146 |
| Casuarinaceae | Casuarina glauca | 5 | Cgl03G2507, Cgl03G3001, Cgl03G3002, Cgl05G0150, Cgl05G1288 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g00660 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0091s00023.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g28220, gene.Thate03g09230 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6128, nbisL1-mrna-9495 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.899 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032050 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11031 |
| Poaceae | Echinochloa crus-galli | 8 | AH09.2742, BH09.2987, CH02.1612, CH02.1620, CH04.1178 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0299070, gene-QOZ80_4BG0329750 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0213480.1, HORVU.MOREX.r3.4HG0395170.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_047618, gene-QYE76_047683 |
| Poaceae | Oryza coarctata | 2 | Oco07G019550, Oco08G018820 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g58580.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G008800, gene-BS78_06G287500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307088 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G010870, Chr12G026040, Chr23G000680, Chr25G000510 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G976000, Tel4E01G410700 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG078810, gene_TRIDC2BG086970 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2B02G599300.1, TraesCS2D02G593400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb065790_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18035 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20708 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.965, evm.TU.LG24.968 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04790 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.293 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10870 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11137 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.289, evm.TU.utg000006l.558 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009354, Maker00013373 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9213 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7010 |
| Salicaceae | Populus euphratica | 2 | populus_peu27736, populus_peu27737 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600003, gene-LOC132640627 |
| Solanaceae | Solanum chilense | 3 | SOLCI001068600, SOLCI001178800, SOLCI004055600 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107018662, gene-LOC107019957, gene-LOC107026845 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_1447, gene_15243, gene_15244 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2179 |
| Zosteraceae | Zostera marina | 1 | Zosma01g35290.v3.1 |