Basic Information
Locus ID:
AsparagusV1_07.2126.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 73432193 | 73442746 | - | AsparagusV1_07.2126.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 96,812.41 Da | 57.67 | 81.28 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 185 | 294 | 3.0E-8 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 650 | 685 | 2.5E-6 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 613 | 688 | 1.34E-10 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 743 | 815 | 1.08E-7 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 68 | 314 | 4.12E-19 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 615 | 692 | 3.1E-8 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 742 | 821 | 9.2E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 65 | 337 | 3.5E-25 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 744 | 812 | 0.0013 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 622 | 686 | 3.3E-6 | IPR014720 |
| SMART | SM00577 | forpap2 | 128 | 304 | 3.2E-17 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 621 | 687 | 13.00926 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 743 | 813 | 10.435972 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 69 | 317 | 15.306216 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 540 | - | - |
| Coils | Coil | Coil | 90 | 126 | - | - |
| Coils | Coil | Coil | 801 | 821 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_020272884.1 | LOW QUALITY PROTEIN: RNA polymerase II C-terminal domain phosphatase-like 1 [Asparagus officinalis] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EDR0 | protein-serine/threonine phosphatase OS=Asparagus officinalis OX=4686 GN=A4U43_C07F21260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology